STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADM98576.1Integrase/recombinase; Protein involved in DNA binding, DNA recombination and DNA integration. (139 aa)    
Predicted Functional Partners:
ADM98575.1
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
       0.664
ADN00322.1
Oxalate decarboxylase oxdD; Protein involved in nutrient reservoir activity and xenobiotic metabolic process.
      
 0.647
ADM97070.1
Phage integrase; Protein involved in DNA binding, DNA recombination and DNA integration.
  
   
 0.601
ftsK
DNA-binding membrane protein required for chromosome resolution and partitioning; Protein involved in nucleotide binding, DNA binding, ATP binding, SOS response, cell cycle, chromosome segregation and cell division.
 
   
 0.593
ADM98577.1
Hypothetical protein; 0.1 unknown function; conserved hypothetical product.
       0.572
IS
IS, phage, Tn; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown; Belongs to the 'phage' integrase family.
      
 0.498
xerC
Site-specific tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically ex [...]
 
 
 
0.489
gntX
Gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system; Protein involved in (DEPRECATED) molecular function unknown, transferase activity, (DEPRECATED) biological process unknown and nucleoside metabolic process.
   
    0.487
tyrA
Protein involved in chorismate mutase activity, prephenate dehydrogenase activity, tyrosine biosynthetic process, L-phenylalanine biosynthetic process and aromatic amino acid family biosynthetic process.
  
    0.454
recR
Gap repair protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.446
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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