STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjZHypothetical transcriptional regulator ycjZ; Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
sftR-2
Transcriptional regulator, LysR family; Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.596
ADM99126.1
Nitrogen assimilation control protein; Nac belongs to the LysR family of transcriptional regulators; Nac is a member of RpoN and GlnG (NtrC) regulons; Protein involved in transcription repressor activity, transcription factor activity, transcription, nitrogen compound metabolic process and regulation of transcription, DNA-dependent.
  
     0.585
ADM99396.1
Transcriptional regulator, LysR family; Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.577
abgR
Regulatory protein (induces abgABT, used to catabolize p-aminobenzoyl-glutamate); Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.567
sftR
Transcriptional regulator, LysR family; Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.534
nac
Nitrogen assimilation control protein; Nac belongs to the LysR family of transcriptional regulator; Protein involved in transcription activator activity, transcription repressor activity, transcription factor activity, nitrogen compound metabolic process, transcription and regulation of transcription, DNA-dependent.
  
     0.533
ADM98836.1
Protein involved in oxidoreductase activity, catalytic activity, metabolic process and (OBSOLETE) electron transport.
       0.521
ADM96988.1
Transcriptional regulator, LysR family; Protein involved in transcription factor activity, regulation of transcription, DNA-dependent and transcription; Belongs to the LysR transcriptional regulatory family.
  
    0.513
ADM97714.1
LysR-family transcriptional regulator; Protein involved in transcription factor activity, regulation of transcription, DNA-dependent and transcription; Belongs to the LysR transcriptional regulatory family.
  
     0.503
ADM97896.1
Transcriptional activator protein lysR; Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.479
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.