STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (278 aa)    
Predicted Functional Partners:
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Catalyzes the reduction of 2,5-diketo-3-deoxygluconate (DKII or 4,6-dihydroxy-2,5-dioxohexanoate) into 2-keto-3-deoxygluconate (KDG or 2-dehydro-3-deoxygluconate) with a concomitant oxidation of NADH.
 
 
 0.992
ogl
Oligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants.
    
 0.919
kdgF
Pectin degradation protein kdgF; May have a role in pathogenicity.
 
   
 0.863
uxaC
Protein involved in glucuronate isomerase activity, carbohydrate catabolic process and glucuronate catabolic process.
 
  
 0.823
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.792
pehV
Exo-poly-alpha-D-galacturonosidase precursor; Protein involved in polygalacturonase activity, polysaccharide catabolic process, carbohydrate catabolic process, carbohydrate metabolic process and metabolism by symbiont of host cell wall pectin; Belongs to the glycosyl hydrolase 28 family.
 
     0.756
pehW
Polygalacturonase; Protein involved in polygalacturonase activity, carbohydrate catabolic process, polysaccharide catabolic process, metabolism by symbiont of host cell wall pectin, interaction with host via protein secreted by type II secretion system and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 28 family.
 
     0.755
pehX
Exo-poly-alpha-D-galacturonosidase precursor; Protein involved in polygalacturonase activity, pectate lyase activity, polysaccharide catabolic process, carbohydrate catabolic process, interaction with host via protein secreted by type II secretion system, metabolism by symbiont of substance in host, carbohydrate metabolic process, pectin catabolic process and metabolism by symbiont of host cell wall pectin; Belongs to the glycosyl hydrolase 28 family.
 
     0.750
uxaB
Protein involved in oxidoreductase activity, coenzyme binding and carbohydrate catabolic process; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
   
 0.749
uxaA
Altronate hydrolase; Protein involved in hydro-lyase activity and carbohydrate catabolic process.
 
  
 0.737
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.