STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxyROxyR belongs to the LysR family of transcriptional regulators; OxyR is inactivated by reduction of its essential disulfide bond (Cys 199-Cys 208); while other genes regulated by OxyR are present in ECH3937, the gene for the regulatory RNA OxyS is not detected; Protein involved in transcription activator activity, transcription repressor activity, transcription factor activity, transcription and regulation of transcription, DNA-dependent. (305 aa)    
Predicted Functional Partners:
ADM96988.1
Transcriptional regulator, LysR family; Protein involved in transcription factor activity, regulation of transcription, DNA-dependent and transcription; Belongs to the LysR transcriptional regulatory family.
  
     0.750
ADM97896.1
Transcriptional activator protein lysR; Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.732
aaeR
Putative transcriptional regulator LYSR-type; QseA is regulated by quorum sensing; Qsea belongs to the lysR family of transcriptional regulators; Protein involved in transcription repressor activity, transcription activator activity, transcription factor activity, transcription and regulation of transcription, DNA-dependent.
  
     0.712
ADN00135.1
Transcriptional regulator; Protein involved in transcription factor activity, regulation of transcription, DNA-dependent and transcription; Belongs to the LysR transcriptional regulatory family.
  
     0.697
ADM96264.1
Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.696
ADM99208.1
Transcriptional regulator, LysR family; Protein involved in transcription factor activity and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.675
ADN00566.1
LysR-family transcriptional regulator; Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.674
ADM99322.1
LysR-family transcriptional regulator; Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.652
lysR
DNA-binding transcriptional dual regulator; Protein involved in transcription repressor activity, transcription activator activity, transcription factor activity, lysine biosynthetic process via diaminopimelate, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.638
ADM98111.1
Transcriptional regulator, LysR family, in glycolate utilization operon; Protein involved in transcription activator activity, transcription repressor activity, transcription factor activity, transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family.
  
     0.634
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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