STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wzbLow molecular weight protein-tyrosine-phosphatase wzb; Protein involved in protein tyrosine phosphatase activity, colanic acid biosynthetic process and protein amino acid dephosphorylation; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (144 aa)    
Predicted Functional Partners:
wzc
Tyrosine-protein kinase wzc; Protein involved in colanic acid biosynthetic process, protein modification process and lipopolysaccharide biosynthetic process.
 
 
 0.984
wza
Capsule polysaccharide export protein; Protein involved in (OBSOLETE) cell surface antigen activity, host-interacting, polysaccharide transmembrane transporter activity and polysaccharide transport.
  
 0.969
ADM97606.1
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
       0.714
ADM96271.1
Arsenical-resistance protein ACR3; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
  
  
 0.682
ADM96747.1
Capsular polysaccharide synthesis enzyme cpsD, exopolysaccharide synthesis; Protein involved in lipopolysaccharide biosynthetic process.
  
 
 0.619
ybeY
Conserved protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.599
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.587
infB
Translation initiation factor IF2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.581
phr
Deoxyribodipyrimidine photolyase, FAD-binding protein; Protein involved in DNA photolyase activity and DNA repair.
    
   0.577
rsmH
16S rRNA m(4)C1402 methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
    
   0.577
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.