STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynfBProtein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown. (118 aa)    
Predicted Functional Partners:
ynfD
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
 
     0.897
speG
Spermidine N1-acetyltransferase; Protein involved in N-acetyltransferase activity, polyamine biosynthetic process and metabolic process.
  
  
 0.865
yceP
Putative cytoplasmic protein; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
  
     0.774
secM
Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.773
yidQ
Conserved outer membrane protein; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
  
     0.773
yniB
Predicted inner membrane protein.
  
     0.772
tus
Inhibitor of replication at Ter, DNA-binding protein; Protein involved in DNA binding, DNA-dependent DNA replication and DNA replication termination.
  
     0.771
yggN
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
  
     0.770
yacC
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
  
     0.767
ycfL
Probable lipoprotein; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
  
     0.765
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.