STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcEProbable tautomerase ydcE; Protein involved in (DEPRECATED) molecular function unknown, isomerase activity, (DEPRECATED) biological process unknown and cellular aromatic compound metabolic process; Belongs to the 4-oxalocrotonate tautomerase family. (76 aa)    
Predicted Functional Partners:
ADM96340.1
4-oxalocrotonate tautomerase; Protein involved in (DEPRECATED) molecular function unknown, isomerase activity, (DEPRECATED) biological process unknown and cellular aromatic compound metabolic process; Belongs to the 4-oxalocrotonate tautomerase family.
     
  0.900
pemB
Possible pectinesterase; Probably involved in the degradation of methylated oligogalacturonides present in the periplasm.
  
     0.687
ADM98724.1
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
       0.625
yieL
Putative xylanase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate catabolic process and carbohydrate metabolic process.
  
     0.546
ydcT
ABC transporter, ATPase component; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
   
   0.484
rafB
Lactose permease; Protein involved in (DEPRECATED) hydrogen:sugar symporter activity, transporter activity, carbohydrate catabolic process and transport.
  
     0.445
ADM99166.1
MobB protein.
  
     0.445
tsx
Nucleoside-specific channel-forming protein tsx precursor; Protein involved in nucleoside transmembrane transporter activity and nucleobase, nucleoside and nucleotide interconversion.
  
     0.431
sbmC
DNA gyrase inhibitory protein; Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell.
  
     0.419
ADM98726.1
Protein involved in 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, amino acid biosynthetic process, S-adenosylmethionine biosynthetic process and methionine biosynthetic process.
   
   0.409
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.