STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD4ASterile alpha motif domain containing 4A. (706 aa)    
Predicted Functional Partners:
NANOS1
Nanos C2HC-type zinc finger 1.
    
 
 0.666
YWHAE
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon.
    
   0.610
GOLGA3
Golgin A3.
      
 0.516
TMEM63C
Transmembrane protein 63C.
      
 0.507
CARHSP1
Calcium regulated heat stable protein 1.
    
 
 0.505
RNPC3
RNA binding region (RNP1, RRM) containing 3.
      
 0.482
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 
 0.474
PUM2
Pumilio RNA binding family member 2.
    
 
 0.471
PUM1
Pumilio RNA binding family member 1.
    
 
 0.471
WDR5B
WD repeat domain 5.
    
 
 0.453
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.