STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHRF1PHD and ring finger domains 1. (1683 aa)    
Predicted Functional Partners:
INSC
INSC spindle orientation adaptor protein.
   
  
 0.527
RASSF7
Ras association domain-containing protein 8-like.
 
      0.503
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 
 0.495
ENSCPUP00000005744
annotation not available
   
 
 0.493
ENSCPUP00000000049
annotation not available
 
      0.492
DNMT1
DNA methyltransferase 1.
    
 
 0.478
DEAF1
DEAF1 transcription factor.
      
 0.452
GTF3C1
General transcription factor IIIC subunit 1.
   
  
 0.422
MAGOH
Mago homolog, exon junction complex subunit.
    
 
 0.413
TRNT1
tRNA nucleotidyl transferase 1.
      
 0.405
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.