STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLEC19AC-type lectin domain containing 19A. (187 aa)    
Predicted Functional Partners:
SYT17
Synaptotagmin 17.
 
   
 0.832
HAPLN1
Hyaluronan and proteoglycan link protein 1.
    
 0.540
TNC
Tenascin C.
    
  0.536
ENSCPUP00000016261
annotation not available
    
  0.536
TNN
Tenascin N.
    
  0.536
TNR
Tenascin R.
    
  0.536
HABP2
Hyaluronan binding protein 2.
   
  0.522
HGFAC
HGF activator.
   
  0.521
ADGRL2
Adhesion G protein-coupled receptor L2.
    
  0.513
ADGRL3
Adhesion G protein-coupled receptor L3.
    
  0.513
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.