STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF4Membrane associated ring-CH-type finger 4. (355 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.697
FAF2
Fas associated factor family member 2.
    
 0.609
FAF1
Fas associated factor 1.
    
 0.609
VCP
Valosin containing protein.
    
 0.574
SPATA5
Spermatogenesis associated 5.
    
 0.574
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 0.574
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.550
UBE2QL1
Ubiquitin conjugating enzyme E2 Q family like 1.
      
 0.538
LOC106896967
Keratinocyte proline-rich protein-like.
    
 0.499
UBE2G2
Ubiquitin conjugating enzyme E2 G2.
    
 0.499
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.