STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RARARetinoic acid receptor alpha. (410 aa)    
Predicted Functional Partners:
MED1
Mediator complex subunit 1.
    
 0.800
RXRA
Retinoid X receptor alpha.
   
0.787
RXRG
Retinoid X receptor gamma.
   
0.787
ENSCPUP00000029848
annotation not available
   
 0.787
NCOR2
Nuclear receptor corepressor 2.
    
 0.780
NCOR1
Nuclear receptor corepressor 1.
    
 0.780
ZBTB16
Zinc finger and BTB domain containing 16.
    
 0.774
SPI1
Spi-1 proto-oncogene.
    
 0.740
LOC106896579
Protein PML-like.
    
 0.726
LOC106896581
Protein PML-like.
    
 0.726
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.