STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM11LSM11, U7 small nuclear RNA associated. (310 aa)    
Predicted Functional Partners:
ENSCPUP00000023951
annotation not available
    
 0.972
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.970
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
     
 0.968
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
    
 0.967
LOC106902905
Histone RNA hairpin-binding protein-like.
     
 0.958
SNRPB
Small nuclear ribonucleoprotein-associated protein B.
    
 0.941
DDX20
DEAD-box helicase 20.
    
 0.935
LOC106898940
Survival motor neuron protein-like.
    
 0.929
APAF1
Apoptotic peptidase activating factor 1.
    
 0.926
NHP2
NHP2 ribonucleoprotein.
     
 0.922
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.