STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADAM19ADAM metallopeptidase domain 19. (898 aa)    
Predicted Functional Partners:
SH3PXD2A
SH3 and PX domains 2A.
    
 0.717
ENSCPUP00000009354
annotation not available
    
 0.508
ENSCPUP00000009356
annotation not available
    
 0.508
LGI1
Leucine rich glioma inactivated 1.
    
 0.508
MAD2L2
Mitotic arrest deficient 2 like 2.
    
 
 0.477
SH3PXD2B
SH3 and PX domains 2B.
    
 0.470
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
  0.464
LGI2
Leucine rich repeat LGI family member 2.
     
 0.438
LOC106888173
B-cadherin-like.
    
  0.420
CDH1
Cadherin-1-like.
    
  0.420
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.