STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRRC45Leucine rich repeat containing 45. (670 aa)    
Predicted Functional Partners:
PAK2
P21 (RAC1) activated kinase 2.
 
  
  0.773
PARD6A
Par-6 family cell polarity regulator alpha.
     
 0.716
NCK2
NCK adaptor protein 2.
     
 0.707
MAP2K4
Mitogen-activated protein kinase kinase 4.
 
   
  0.704
CDC42
Cell division cycle 42.
 
   
  0.704
RANBP2
E3 SUMO-protein ligase RanBP2-like.
   
  0.690
PAK4
P21 (RAC1) activated kinase 4.
    
  0.689
PAK5
P21 (RAC1) activated kinase 5.
    
  0.689
ANKS3
Ankyrin repeat and sterile alpha motif domain containing 3.
   
    0.683
PAK6
P21 (RAC1) activated kinase 6.
    
  0.676
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.