STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HHATHedgehog acyltransferase. (502 aa)    
Predicted Functional Partners:
NDUFAB1
NADH:ubiquinone oxidoreductase subunit AB1.
  
 
 0.916
PALB2
Partner and localizer of BRCA2.
  
 
 0.916
AASDH
Aminoadipate-semialdehyde dehydrogenase.
  
  
 0.913
DHH
Desert hedgehog signaling molecule.
   
 0.757
SHH
Sonic hedgehog signaling molecule.
   
 0.731
IHH
Indian hedgehog signaling molecule.
   
 0.726
HAS2
Hyaluronan synthase 2.
  
 
 0.532
HAS3
Hyaluronan synthase 3.
  
 
 0.532
UGDH
UDP-glucose 6-dehydrogenase.
  
  
 0.447
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.