STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106901339Putative RNA-binding protein Luc7-like 2. (386 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 0.988
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.987
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
    
 0.983
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.982
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.980
ENSCPUP00000023645
annotation not available
   
 0.977
ENSCPUP00000023951
annotation not available
   
 0.973
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.972
SF3B3
Splicing factor 3b subunit 3.
    
 0.969
TRNAU1AP
tRNA selenocysteine 1 associated protein 1.
    
 0.952
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.