STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBR2Ubiquitin protein ligase E3 component n-recognin 2. (1751 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.995
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
  0.925
UBE2A
Ubiquitin conjugating enzyme E2 A.
    
 0.850
UBE2B
Ubiquitin conjugating enzyme E2 B.
    
 0.850
RPS27A
Ribosomal protein S27a.
   
 0.799
ZFAND4
Zinc finger AN1-type containing 4.
   
 0.727
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
     
 0.702
ENSCPUP00000011075
annotation not available
    
  0.688
CDC73
Cell division cycle 73.
   
 
  0.676
OASL
2'-5'-oligoadenylate synthase 1-like.
   
 0.667
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.