STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NR1D1Nuclear receptor subfamily 1 group D member 1. (556 aa)    
Predicted Functional Partners:
NCOR2
Nuclear receptor corepressor 2.
    
 0.925
NCOR1
Nuclear receptor corepressor 1.
    
 0.925
HDAC3
Histone deacetylase 3.
    
 0.746
ARNTL
Aryl hydrocarbon receptor nuclear translocator like.
     
 0.704
NR1D2
Nuclear receptor subfamily 1 group D member 2.
  
0.607
CRY2
Cryptochrome circadian regulator 2.
      
 0.548
BHLHE40
Basic helix-loop-helix family member e40.
      
 0.539
PER2
Period circadian regulator 2.
   
 
 0.526
PER3
Period circadian regulator 3.
   
 
 0.526
TNPO3
Transportin 3.
      
 0.520
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.