STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APTXAprataxin. (350 aa)    
Predicted Functional Partners:
TDP1
tyrosyl-DNA phosphodiesterase 1.
    
 
 0.745
LIG4
DNA ligase 4.
   
 
 0.714
LIG3
DNA ligase 3.
   
 
 0.697
RAE1
Ribonucleic acid export 1.
   
    0.673
EIF2B1
Eukaryotic translation initiation factor 2B subunit alpha.
   
    0.672
OGG1
8-oxoguanine DNA glycosylase.
    
 
 0.643
ENSCPUP00000003237
annotation not available
    
 
 0.638
WRN
WRN RecQ like helicase.
   
  
 0.617
APLF
Aprataxin and PNKP like factor.
      
 0.610
XRCC6
X-ray repair cross complementing 6.
      
 0.610
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.