STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP27Matrix metalloproteinase-27-like. (486 aa)    
Predicted Functional Partners:
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.838
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.805
TNN
Tenascin N.
   
 0.726
TNC
Tenascin C.
    
 0.705
ENSCPUP00000016261
annotation not available
    
 0.705
TNR
Tenascin R.
    
 0.705
TIMP4
TIMP metallopeptidase inhibitor 4.
    
 0.660
LOC106898575
Matrix metalloproteinase-16-like.
  
0.610
MMP9
Matrix metallopeptidase 9.
   
0.601
MMP7
Matrix metallopeptidase 7.
  
0.591
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.