STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000001665annotation not available (76 aa)    
Predicted Functional Partners:
KDM6A
Lysine demethylase 6A.
   
 0.955
ARID4A
AT-rich interaction domain 4A.
   
 0.850
ARID4B
AT-rich interaction domain 4B.
   
 0.850
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 0.830
KDM2A
Lysine demethylase 2A.
    
 0.826
KDM2B
Lysine demethylase 2B.
    
 0.826
DOT1L
DOT1 like histone lysine methyltransferase.
   
 0.824
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.813
HAT1
Histone acetyltransferase 1.
    
 0.812
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.802
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.