STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000001675annotation not available (762 aa)    
Predicted Functional Partners:
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.831
LOC106886819
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.795
RAB7B
RAB7B, member RAS oncogene family.
    
 0.790
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 0.719
MAP1LC3B
Microtubule associated protein 1 light chain 3 beta.
   
 0.719
RAB33B
RAB33B, member RAS oncogene family.
     
 0.718
RAB9B
RAB9B, member RAS oncogene family.
   
 0.696
RAB9A
RAB9A, member RAS oncogene family.
   
 0.696
ENSCPUP00000023347
annotation not available
   
 0.696
ENSCPUP00000011600
annotation not available
     
 0.628
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.