Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPL34Ribosomal protein L34. (117 aa)    
Predicted Functional Partners:
RPL37A
Ribosomal protein L37a.
   
 
 0.999
RPL36AL
Ribosomal protein L36a like.
   
 0.999
RPSA
Ribosomal protein SA.
  
 
 0.999
RPS28
Ribosomal protein S28.
   
 
 0.999
ENSCPUP00000002191
annotation not available
  
 0.999
RPS3
Ribosomal protein S3.
  
 
 0.999
RPL39
Ribosomal protein L39.
   
 0.999
RPS13
Ribosomal protein S13.
   
 
 0.999
RPS8
Ribosomal protein S8.
   
 
 0.999
RPS14
Ribosomal protein S14.
  
 
 0.999
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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