STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRPPRCLeucine rich pentatricopeptide repeat containing. (1338 aa)    
Predicted Functional Partners:
SLIRP
SRA stem-loop interacting RNA binding protein.
   
 
 0.906
PRORP
Protein only RNase P catalytic subunit.
     
 0.761
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
   
 
 0.722
GFM1
G elongation factor mitochondrial 1.
   
  
 0.624
LOC106885583
Cytochrome c.
   
 
 0.607
PTCD3
Pentatricopeptide repeat domain 3.
   
  
 0.600
ENSCPUP00000007088
annotation not available
   
 
 0.594
HNRNPA2B1
Heterogeneous nuclear ribonucleoprotein A2/B1.
    
 
 0.573
XPO1
Exportin 1.
   
  
 0.569
MRPS22
Mitochondrial ribosomal protein S22.
   
  
 0.550
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.