STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC3A1Solute carrier family 3 member 1. (666 aa)    
Predicted Functional Partners:
SLC7A5
Large neutral amino acids transporter small subunit 1.
  
 0.998
SLC7A11
Solute carrier family 7 member 11.
  
 0.996
LOC106885384
Cystine/glutamate transporter-like.
  
 0.985
SLC7A10
Solute carrier family 7 member 10.
  
 0.972
SLC7A9
Solute carrier family 7 member 9.
  
 0.921
LOC106902190
Y+L amino acid transporter 2-like.
  
 0.918
SLC7A6
Solute carrier family 7 member 6.
  
 0.918
LOC106896672
B(0,+)-type amino acid transporter 1-like.
  
 0.908
SLC7A13
Solute carrier family 7 member 13.
  
 0.885
GBE1
1,4-alpha-glucan branching enzyme 1.
  
 
 0.874
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.