STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF128Ring finger protein 128. (420 aa)    
Predicted Functional Partners:
OTUB1
OTU deubiquitinase, ubiquitin aldehyde binding 1.
    
 0.802
USP8
Ubiquitin specific peptidase 8.
    
 0.742
USP21
Ubiquitin specific peptidase 21.
    
 0.612
USP2
Ubiquitin specific peptidase 2.
    
 0.612
S100Z
S100 calcium binding protein Z.
      
 0.603
ENSCPUP00000011075
annotation not available
    
  0.581
RPS27A
Ribosomal protein S27a.
    
  0.581
RNF150
Ring finger protein 150.
   
0.580
KCNV2
Potassium voltage-gated channel modifier subfamily V member 2.
    
 
 0.523
RNF130
Ring finger protein 130.
  
0.521
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.