STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE6HPhosphodiesterase 6H. (85 aa)    
Predicted Functional Partners:
PDE6C
Phosphodiesterase 6C.
   
 
 0.911
ENSCPUP00000012354
annotation not available
   
 
 0.905
PDE6B
Phosphodiesterase 6B.
   
 
 0.866
ENSCPUP00000021365
annotation not available
  
 
 
0.853
GUK1
Guanylate kinase 1.
   
 
  0.838
GUCY2C
Guanylate cyclase 2C.
     
 0.837
ADCY1
Adenylate cyclase 1.
     
 0.837
ENSCPUP00000021239
annotation not available
     
 0.835
PDE6D
Phosphodiesterase 6D.
     
 0.799
GNB3
G protein subunit beta 3.
   
 
 0.793
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.