STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRBD1S1 RNA binding domain 1. (972 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.997
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.953
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.951
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.945
CDC73
Cell division cycle 73.
   
 0.935
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.935
TNKS1BP1
Tankyrase 1 binding protein 1.
   
 0.899
SSRP1
Structure specific recognition protein 1.
   
 0.899
ENSCPUP00000003334
annotation not available
   
 0.894
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
   
 0.894
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.