STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CX3CR1CX3C chemokine receptor 1-like. (354 aa)    
Predicted Functional Partners:
CCL5
C-C motif chemokine 5-like.
   
 0.956
LOC106891142
Fractalkine-like.
  
 
 0.950
CXCL12
C-X-C motif chemokine ligand 12.
   
 0.946
ENSCPUP00000004523
annotation not available
     
 0.916
ENSCPUP00000006602
annotation not available
     
 0.916
LOC106898468
C-C motif chemokine 4 homolog.
   
 0.896
CCL21
C-C motif chemokine ligand 21.
    
 0.890
LOC106890974
Lymphotactin-like.
    
 0.887
LOC106894455
C-C motif chemokine 4-like.
   
 0.873
CCL20
C-C motif chemokine ligand 20.
    
 0.872
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.