STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCC1Chloride channel CLIC like 1. (519 aa)    
Predicted Functional Partners:
COX11
Cytochrome c oxidase assembly protein COX11, mitochondrial.
  
 
 0.919
LOC106898730
Cytochrome c oxidase assembly protein COX15 homolog.
  
 
 0.914
UQCRFS1
Cytochrome b-c1 complex subunit Rieske, mitochondrial.
    
 0.875
COX10
Protoheme IX farnesyltransferase, mitochondrial.
  
 
 0.832
THYN1
Thymocyte nuclear protein 1.
    
  0.725
COX5A
Cytochrome c oxidase subunit 5A, mitochondrial.
    
 
 0.707
COX4I1
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial.
    
 
 0.651
PLSCR1
Phospholipid scramblase 1-like.
    
 
 0.618
PMPCB
Peptidase, mitochondrial processing beta subunit.
   
 
 0.610
UQCRC1
Cytochrome b-c1 complex subunit 1, mitochondrial.
   
 
 0.610
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.