STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCFD2Multiple coagulation factor deficiency 2. (143 aa)    
Predicted Functional Partners:
LMAN1
Lectin, mannose binding 1.
   
 0.998
F8
Coagulation factor VIII.
     
 0.801
F5
Coagulation factor V.
     
 0.707
SEC24C
SEC24 homolog C, COPII coat complex component.
     
 0.673
EDIL3
EGF like repeats and discoidin domains 3.
     
 0.660
SEC22B
SEC22 homolog B, vesicle trafficking protein.
   
 
 0.649
CTSZ
Cathepsin Z.
     
 0.649
CTSC
Cathepsin C.
     
 0.646
SEC24D
SEC24 homolog D, COPII coat complex component.
     
 0.644
SCFD1
Sec1 family domain containing 1.
     
 0.643
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.