STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRANK1Tetratricopeptide repeat and ankyrin repeat containing 1. (2971 aa)    
Predicted Functional Partners:
SCAF4
SR-related CTD associated factor 4.
   
 0.914
SCAF8
SR-related CTD associated factor 8.
   
 0.914
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.740
EXOSC10
Exosome component 10.
    
 
 0.619
DROSHA
Drosha ribonuclease III.
   
 
 0.612
XRN2
5'-3' exoribonuclease 2.
   
 
 0.583
POLR2C
RNA polymerase II subunit C.
    
 
 0.557
ENSCPUP00000003334
annotation not available
    
 
 0.555
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.555
ENSCPUP00000008283
annotation not available
   
    0.528
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.