STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COILCoilin. (607 aa)    
Predicted Functional Partners:
NCOR2
Nuclear receptor corepressor 2.
   
 0.877
NCOR1
Nuclear receptor corepressor 1.
   
 0.877
LOC106898940
Survival motor neuron protein-like.
    
 0.792
HDAC3
Histone deacetylase 3.
   
 0.768
HDAC8
Histone deacetylase 8.
   
 0.768
HDAC2
Histone deacetylase 2.
   
 0.768
HDAC1
Histone deacetylase 1.
   
 0.768
PSME3
Proteasome activator subunit 3.
    
 0.765
SKP1
S-phase kinase associated protein 1.
    
 0.756
RANBP2
E3 SUMO-protein ligase RanBP2-like.
   
 0.754
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.