STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF4Bpre-mRNA processing factor 4B. (1006 aa)    
Predicted Functional Partners:
PRPF6
pre-mRNA processing factor 6.
    
 
 0.976
PRPF8
pre-mRNA processing factor 8.
    
 
 0.950
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.944
PNN
Pinin, desmosome associated protein.
   
 0.923
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.917
PRPF4
pre-mRNA processing factor 4.
    
 
 0.904
RBM25
RNA binding motif protein 25.
   
  0.901
USP39
Ubiquitin specific peptidase 39.
    
   0.887
TCERG1
Transcription elongation regulator 1.
   
 0.886
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.880
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.