STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VRTNVertebrae development associated. (675 aa)    
Predicted Functional Partners:
SYNDIG1L
Synapse differentiation inducing 1 like.
   
  
 0.525
TMEM192
Transmembrane protein 192.
    
 0.516
PDIA4
Protein disulfide isomerase family A member 4.
      
 0.514
ABCD4
ATP binding cassette subfamily D member 4.
      
 0.512
SYBU
Syntabulin.
    
 0.472
AREL1
Apoptosis resistant E3 ubiquitin protein ligase 1.
      
 0.422
KCTD2
Potassium channel tetramerization domain containing 2.
    
  0.414
UBE2I
Ubiquitin conjugating enzyme E2 I.
    
  0.414
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.