STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBL7Ubiquitin like 7. (380 aa)    
Predicted Functional Partners:
UBXN7
UBX domain protein 7.
    
 0.990
MYSM1
Histone H2A deubiquitinase MYSM1.
   
 0.989
ENSCPUP00000006684
annotation not available
    
 0.976
LOC106897508
Intersectin-2-like.
    
 0.976
NBR1
NBR1 autophagy cargo receptor.
   
 0.967
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.966
ENSCPUP00000011075
annotation not available
   
 0.951
PSMD4
Proteasome 26S subunit, non-ATPase 4.
   
 0.941
TRAF7
TNF receptor associated factor 7.
    
 0.939
RPS25
Ribosomal protein S25.
   
 0.934
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.