STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TP53INP1Tumor protein p53 inducible nuclear protein 1. (236 aa)    
Predicted Functional Partners:
GABARAPL2
GABA type A receptor associated protein like 2.
    
 0.889
LOC106886819
Gamma-aminobutyric acid receptor-associated protein-like 1.
    
 0.877
VMP1
Vacuole membrane protein 1.
     
 0.850
HIPK2
Homeodomain interacting protein kinase 2.
    
 0.791
TP53INP2
Tumor protein p53 inducible nuclear protein 2.
  
  
0.729
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
    
 0.638
MAP1LC3B
Microtubule associated protein 1 light chain 3 beta.
    
 0.638
MAP1LC3C
Microtubule associated protein 1 light chain 3 gamma.
    
 0.621
LOC106886927
Microtubule-associated proteins 1A/1B light chain 3C-like.
    
 0.621
ENSCPUP00000006979
annotation not available
    
 0.560
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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