STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106892643peptidyl-tRNA hydrolase ICT1, mitochondrial-like. (217 aa)    
Predicted Functional Partners:
MRPL21
Mitochondrial ribosomal protein L21.
  
   0.983
ENSCPUP00000003125
annotation not available
  
 
 0.982
MRPS6
Mitochondrial ribosomal protein S6.
  
 
 0.961
ENSCPUP00000002090
annotation not available
  
 
 0.960
MRPL36
Mitochondrial ribosomal protein L36.
   
 
 0.959
MRPL20
Mitochondrial ribosomal protein L20.
  
 
 0.958
MRPL12
Mitochondrial ribosomal protein L12.
  
 
 0.955
MRPL19
Mitochondrial ribosomal protein L19.
  
 
 0.952
MRPL32
Mitochondrial ribosomal protein L32.
  
 
 0.950
MRPL13
Mitochondrial ribosomal protein L13.
  
 
 0.947
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.