STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IPO13Importin 13. (939 aa)    
Predicted Functional Partners:
RBM8A
RNA binding motif protein 8A.
    
 0.990
GART
annotation not available
   
 0.964
LOC106885656
Trifunctional purine biosynthetic protein adenosine-3-like.
   
 0.964
UBE2I
Ubiquitin conjugating enzyme E2 I.
   
 
 0.962
MAGOH
Mago homolog, exon junction complex subunit.
    
 0.960
RAN
RAN, member RAS oncogene family.
    
 0.956
KCTD2
Potassium channel tetramerization domain containing 2.
   
 
 0.921
EIF1AY
Eukaryotic translation initiation factor 1A X-linked.
    
 
 0.906
ADGRD1
Adhesion G protein-coupled receptor D1.
    
 0.904
EIF5A2
Eukaryotic translation initiation factor 5A2.
    
 
 0.800
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.