STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000003365annotation not available (192 aa)    
Predicted Functional Partners:
ENSCPUP00000003380
annotation not available
 
     0.921
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
 
 0.685
TBX1
T-box transcription factor 1.
   
  
 0.567
ST6GALNAC6
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6.
   
    0.549
SPEF2
Sperm flagellar 2.
   
 
 0.541
SPAG17
Sperm associated antigen 17.
    
 
 0.517
WDPCP
WD repeat containing planar cell polarity effector.
   
    0.511
CFAP221
Cilia and flagella associated protein 221.
    
 
 0.510
DPY30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.485
ENSCPUP00000020284
annotation not available
  
 
   0.482
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.