STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KLHL4Kelch like family member 4. (720 aa)    
Predicted Functional Partners:
CUL3
Cullin 3.
    
 0.872
RBX1
Ring-box 1.
    
 0.799
SQSTM1
Sequestosome 1.
    
 0.741
KLHL7
Kelch like family member 7.
  
 
 
0.735
BBS9
Protein PTHB1-like.
    
 0.735
KLHL21
Kelch like family member 21.
  
 
 
0.732
TTC8
Tetratricopeptide repeat domain 8.
    
 0.716
KBTBD8
Kelch repeat and BTB domain containing 8.
    
 
0.713
ARIH1
Ariadne RBR E3 ubiquitin protein ligase 1.
    
  0.686
KLHL22
Kelch like family member 22.
  
 
 
0.674
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.