STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR92WD repeat domain 92. (202 aa)    
Predicted Functional Partners:
RPAP3
RNA polymerase II associated protein 3.
   
 0.992
PPP3R1
Protein phosphatase 3 regulatory subunit B, alpha.
 
  
 0.990
URI1
URI1 prefoldin like chaperone.
    
 0.983
RUVBL2
ruvB-like 2.
   
 0.981
POLR2E
RNA polymerase II subunit E.
    
 0.977
PDRG1
P53 and DNA damage regulated 1.
    
 0.976
RUVBL1
RuvB like AAA ATPase 1.
   
 0.970
PPP3CC
Protein phosphatase 3 catalytic subunit gamma.
    
 0.926
PPP3CB
Protein phosphatase 3 catalytic subunit beta.
    
 0.926
PPP3CA
Protein phosphatase 3 catalytic subunit alpha.
    
 0.926
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.