STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GTF2H1General transcription factor IIH subunit 1. (548 aa)    
Predicted Functional Partners:
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.999
MNAT1
MNAT1 component of CDK activating kinase.
    
 0.999
LOC106898943
General transcription factor IIH subunit 2.
    
 0.999
GTF2H5
General transcription factor IIH subunit 5.
    
 0.998
CCNH
Cyclin H.
    
 0.998
CDK7
Cyclin dependent kinase 7.
   
 0.997
GTF2E2
General transcription factor IIE subunit 2.
    
 0.995
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.995
ENSCPUP00000010831
annotation not available
    
 0.993
ENSCPUP00000010828
annotation not available
    
 0.988
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.