STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COCHCochlin. (546 aa)    
Predicted Functional Partners:
FREM1
FRAS1 related extracellular matrix 1.
    
 0.764
FRAS1
Fraser extracellular matrix complex subunit 1.
    
 0.750
GLE1
GLE1 RNA export mediator.
    
 0.669
RPS28
Ribosomal protein S28.
   
  0.640
RPS15
Ribosomal protein S15.
   
  0.640
ASF1A
Anti-silencing function 1A histone chaperone.
    
 0.633
RPS24
Ribosomal protein S24.
   
 0.627
RPS19
Ribosomal protein S19.
   
 0.623
RPS21
Ribosomal protein S21.
   
  0.595
RPS2
40S ribosomal protein S2.
   
  0.595
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.