STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEP290Centrosomal protein 290. (2345 aa)    
Predicted Functional Partners:
CC2D2A
Coiled-coil and C2 domain containing 2A.
   
 0.939
MKS1
MKS transition zone complex subunit 1.
    
 0.929
TMEM216
Transmembrane protein 216.
     
 0.925
B9D1
B9 domain containing 1.
   
 
 0.923
AHI1
Abelson helper integration site 1.
   
 0.920
TMEM67
Transmembrane protein 67.
   
 
 0.919
TMEM231
Transmembrane protein 231.
     
 0.915
TCTN1
Tectonic family member 1.
     
 0.911
IQCB1
IQ motif containing B1.
    
 
 0.899
TMEM17
Transmembrane protein 17-like.
     
 0.869
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.