STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000004074annotation not available (233 aa)    
Predicted Functional Partners:
ENSCPUP00000004072
annotation not available
 
      0.899
DMC1
DNA meiotic recombinase 1.
   
 
 0.589
TRIP13
Pachytene checkpoint protein 2 homolog.
   
 
 0.552
RAD51
RAD51 recombinase.
   
 
 0.521
KNL1
Kinetochore scaffold 1.
   
 
 0.487
RAD51C
RAD51 paralog C.
   
 
 0.487
SMC3
Structural maintenance of chromosomes 3.
    
 
 0.470
MND1
Meiotic nuclear divisions 1.
    
 
 0.451
ENSCPUP00000019958
annotation not available
   
 
 0.438
FANCM
FA complementation group M.
      
 0.438
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.