STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFNGLFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase. (368 aa)    
Predicted Functional Partners:
NOTCH2
Notch receptor 2.
    
 0.880
NOTCH1
Notch receptor 1.
    
 0.865
MFNG
MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase.
  
  
 
0.839
RFNG
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase.
  
  
 
0.836
NELFB
Negative elongation factor complex member B.
   
 0.812
POLR2H
RNA polymerase II subunit H.
    
  0.723
POLR2F
RNA polymerase II subunit F.
    
 0.697
POLR2B
RNA polymerase II subunit B.
    
  0.683
ENSCPUP00000000679
annotation not available
    
  0.679
POLR2C
RNA polymerase II subunit C.
    
  0.679
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.