STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHST12Carbohydrate sulfotransferase 12. (419 aa)    
Predicted Functional Partners:
CHST10
Carbohydrate sulfotransferase 10.
     
0.709
CSGALNACT2
Chondroitin sulfate N-acetylgalactosaminyltransferase 2.
     
 0.645
DCN
Decorin.
     
 0.644
CSGALNACT1
Chondroitin sulfate N-acetylgalactosaminyltransferase 1.
     
 0.621
BCAN
Brevican.
     
 0.609
B4GALNT3
beta-1,4-N-acetyl-galactosaminyltransferase 3.
     
 0.518
HYKK
Hydroxylysine kinase.
      
 0.491
CHST15
Carbohydrate sulfotransferase 15.
      
 0.465
CSPG4
Chondroitin sulfate proteoglycan 4.
    
 0.441
LOC106901969
Chondroitin sulfate proteoglycan 4-like.
    
 0.441
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.