STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SORCS1VPS10 domain-containing receptor SorCS1-like. (1249 aa)    
Predicted Functional Partners:
GAK
Cyclin G associated kinase.
     
 0.966
PSMB1
Proteasome 20S subunit beta 1.
    
  0.737
PSMA4
Proteasome 20S subunit alpha 4.
    
  0.686
IGF2R
Insulin like growth factor 2 receptor.
    
 0.683
VPS35
VPS35 retromer complex component.
    
 
 0.681
GGA1
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 
 0.652
GGA2
Golgi associated, gamma adaptin ear containing, ARF binding protein 2.
    
 
 0.652
PSMB4
Proteasome 20S subunit beta 4.
    
  0.641
PSMB2
Proteasome 20S subunit beta 2.
    
  0.641
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
     
 0.638
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.